{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## DRKG Jaccard score analysis\n",
    "This notebook performs an similarity analysis of different link types in the DRKG based on the overlap of the nodes and edges among these edge type.  Speciffically, we report the Jaccard score for edges and nodes and also an edge overlap score among edge types. For definitions of the scores see this notebook and the paper. These scores helps us assess the quality of the constructed DRKG"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Using backend: pytorch\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Download finished. Unzipping the file...\n"
     ]
    }
   ],
   "source": [
    "import pandas as pd\n",
    "import numpy as np\n",
    "import dgl\n",
    "import sys\n",
    "sys.path.insert(1, '../utils')\n",
    "from utils import download_and_extract\n",
    "download_and_extract()\n",
    "drkg_file = '../data/drkg/drkg.tsv'\n",
    "df = pd.read_csv(drkg_file, sep=\"\\t\")\n",
    "triplets = df.values.tolist()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Find unique entities"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "entity_dictionary={}\n",
    "def insert_entry(entry,ent_type,dic):\n",
    "    if ent_type not in dic:\n",
    "        dic[ent_type]={}\n",
    "    ent_n_id=len(dic[ent_type])\n",
    "    if entry not in dic[ent_type]:\n",
    "         dic[ent_type][entry]=ent_n_id\n",
    "    return dic\n",
    "\n",
    "for triple in triplets:\n",
    "    src = triple[0]\n",
    "    split_src=src.split('::')\n",
    "    src_type=split_src[0]\n",
    "    dest = triple[2]\n",
    "    split_dest=dest.split('::')\n",
    "    dest_type=split_dest[0]\n",
    "    insert_entry(src,src_type,entity_dictionary)\n",
    "    insert_entry(dest,dest_type,entity_dictionary)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Next we find for each edge_type the distinct nodes and edges."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "edge_dictionary={}\n",
    "node_dictionary={}\n",
    "for triple in triplets:\n",
    "    src = triple[0]\n",
    "    split_src=src.split('::')\n",
    "    src_type=split_src[0]\n",
    "    dest = triple[2]\n",
    "    split_dest=dest.split('::')\n",
    "    dest_type=split_dest[0]\n",
    "    \n",
    "    src_int_id=entity_dictionary[src_type][src]\n",
    "    dest_int_id=entity_dictionary[dest_type][dest]\n",
    "    \n",
    "    pair=[(src_int_id,dest_int_id)]\n",
    "    etype=triple[1]\n",
    "    if etype in edge_dictionary:\n",
    "        edge_dictionary[etype]+=pair\n",
    "    else:\n",
    "        edge_dictionary[etype]=pair\n",
    "    if etype in node_dictionary:\n",
    "        node_dictionary[etype].add(src_int_id)\n",
    "        node_dictionary[etype].add(dest_int_id)\n",
    "    else:\n",
    "        node_dictionary[etype]=set()   \n",
    "        node_dictionary[etype].add(src_int_id)\n",
    "        node_dictionary[etype].add(dest_int_id)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Score Calculation"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Next we calculate the Jaccard index for nodes and edges and each edge type https://en.wikipedia.org/wiki/Jaccard_index. We also calculate what the overlap coefficient https://en.wikipedia.org/wiki/Overlap_coefficient "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "jacard_pair_info=['edge_type_1\\tedge_type_2\\tJancard-edge\\tJancard-node\\tPct of edges included in smaller set\\n']\n",
    "keys=list(edge_dictionary.keys())\n",
    "for i in range(len(keys)):\n",
    "    for k in range(i+1,len(keys)):\n",
    "        e1=keys[i]\n",
    "        e2=keys[k]\n",
    "        e1_ed=set(edge_dictionary[e1])\n",
    "        e2_ed=set(edge_dictionary[e2])\n",
    "        common_edges=e1_ed.intersection(e2_ed)\n",
    "        union_edges=e1_ed.union(e2_ed)\n",
    "        jacard_edge=float(len(common_edges)/(len(union_edges)))\n",
    "\n",
    "\n",
    "        n1_d=node_dictionary[e1]\n",
    "        n2_d=node_dictionary[e2]\n",
    "        common_nodes=n1_d.intersection(n2_d)\n",
    "        union_nodes=n1_d.union(n2_d)           \n",
    "        jacard_node=float(len(common_nodes)/(len(union_nodes)))\n",
    "\n",
    "        if len(e1_ed)>len(e2_ed):\n",
    "            max_ed=e1_ed\n",
    "            min_ed=e2_ed\n",
    "        else:\n",
    "            max_ed=e2_ed\n",
    "            min_ed=e1_ed\n",
    "        edge_inclusion=float((len(min_ed)-len(min_ed.difference(max_ed)))/len(min_ed))\n",
    "\n",
    "        jacard_pair_info.append(\"{}\\t{}\\t{}\\t{}\\t{}\\n\".format(e1, e2, jacard_edge,jacard_node,edge_inclusion))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "jacard_triplets=[jacard_pair_in.split('\\t') for jacard_pair_in in jacard_pair_info]\n",
    "jacard_triplets=[jacard_triplet[:-1]+[jacard_triplet[-1].split('\\n')[0]] for jacard_triplet in jacard_triplets]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "jacard_triplets_sort=(sorted(jacard_triplets[1:],key=lambda x: float(x[4])))[::-1]\n",
    "jacard_triplets_store=[\"{}\\t{}\\t{}\\t{}\\t{}\\n\".format(j[0], j[1], j[2],j[3],j[4]) for j in jacard_triplets_sort]\n",
    "entity_file = \"edge_pair_jaccard_scores_sorted_overlap.tsv\"\n",
    "with open(entity_file, 'w+') as f:\n",
    "    f.writelines(jacard_triplets_store)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "jacard_triplets_sort=(sorted(jacard_triplets[1:],key=lambda x: float(x[2])))[::-1]\n",
    "jacard_triplets_store=[\"{}\\t{}\\t{}\\t{}\\t{}\\n\".format(j[0], j[1], j[2],j[3],j[4]) for j in jacard_triplets_sort]\n",
    "entity_file = \"edge_pair_jaccard_scores_sorted_jacard.tsv\"\n",
    "with open(entity_file, 'w+') as f:\n",
    "    f.writelines(jacard_triplets_store)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
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'bioarx::VirGenHumGen:Gene:Gene\\tINTACT::CLEAVAGE REACTION::Gene:Gene\\t0.0\\t0.016701461377870562\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tINTACT::DEPHOSPHORYLATION REACTION::Gene:Gene\\t0.0\\t0.019342359767891684\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tINTACT::COLOCALIZATION::Gene:Gene\\t0.0\\t0.058121019108280256\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tINTACT::PHYSICAL ASSOCIATION::Gene:Gene\\t0.0\\t0.025118061734309766\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tINTACT::ASSOCIATION::Gene:Gene\\t0.0\\t0.03046236020697713\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tINTACT::ASSOCIATION::Compound:Gene\\t0.0\\t0.12156536219816819\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tINTACT::DIRECT INTERACTION::Compound:Gene\\t0.0\\t0.027777777777777776\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tINTACT::PHYSICAL ASSOCIATION::Compound:Gene\\t0.0\\t0.024115755627009645\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::AeG::Anatomy:Gene\\t0.0\\t0.020636759918335815\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::CcSE::Compound:Side Effect\\t0.0\\t0.06613887514431799\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::GpPW::Gene:Pathway\\t0.0\\t0.03980530016224987\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::DuG::Disease:Gene\\t0.0\\t0.035378567766193816\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::CdG::Compound:Gene\\t0.0\\t0.0504\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::Gr>G::Gene:Gene\\t0.0\\t0.039298808432630616\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::GpCC::Gene:Cellular Component\\t0.0\\t0.033513910568359194\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::PCiC::Pharmacologic Class:Compound\\t0.0\\t0.10053722179585571\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::GpMF::Gene:Molecular Function\\t0.0\\t0.029738949866508456\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::GcG::Gene:Gene\\t0.0\\t0.018057975605892604\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::AuG::Anatomy:Gene\\t0.0\\t0.021574635732599587\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::AdG::Anatomy:Gene\\t0.0\\t0.022285224500560426\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::CpD::Compound:Disease\\t0.0\\t0.012048192771084338\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::DaG::Disease:Gene\\t0.0\\t0.04085257548845471\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::DrD::Disease:Disease\\t0.0\\t0.03350083752093802\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::CuG::Compound:Gene\\t0.0\\t0.03442424242424243\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::CbG::Compound:Gene\\t0.0\\t0.06372386325921009\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::CtD::Compound:Disease\\t0.0\\t0.01647058823529412\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::DpS::Disease:Symptom\\t0.0\\t0.17769130998702984\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::DdG::Disease:Gene\\t0.0\\t0.032965194109772424\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::CrC::Compound:Compound\\t0.0\\t0.03444034440344403\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::GiG::Gene:Gene\\t0.0\\t0.02441592629154327\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tHetionet::GpBP::Gene:Biological Process\\t0.0\\t0.018912418054048957\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::in_tax::Gene:Tax\\t0.0\\t0.005660501546764957\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::E::Gene:Gene\\t0.0\\t0.017660044150110375\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::W::Gene:Gene\\t0.0\\t0.01687116564417178\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::H::Gene:Gene\\t0.0\\t0.04153354632587859\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::E+::Gene:Gene\\t0.0\\t0.025\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::I::Gene:Gene\\t0.0\\t0.02359550561797753\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::B::Gene:Gene\\t0.0\\t0.026037873270211218\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Rg::Gene:Gene\\t0.0\\t0.026851526851526853\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Q::Gene:Gene\\t0.0\\t0.02563170332666788\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::V+::Gene:Gene\\t0.0\\t0.03065660032029284\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Ud::Gene:Disease\\t0.0\\t0.04919786096256684\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::X::Gene:Disease\\t0.0\\t0.060470324748040316\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::D::Gene:Disease\\t0.0\\t0.0572289156626506\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::G::Gene:Disease\\t0.0\\t0.05972101133391456\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Md::Gene:Disease\\t0.0\\t0.06519274376417233\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Te::Gene:Disease\\t0.0\\t0.07686305111197815\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::J::Gene:Disease\\t0.0\\t0.03269666558756879\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Y::Gene:Disease\\t0.0\\t0.06548431105047749\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::U::Gene:Disease\\t0.0\\t0.03770794824399261\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::L::Gene:Disease\\t0.0\\t0.025315451154670265\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::J::Compound:Disease\\t0.0\\t0.06816479400749063\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Pr::Compound:Disease\\t0.0\\t0.037900874635568516\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Mp::Compound:Disease\\t0.0\\t0.035940803382663845\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Pa::Compound:Disease\\t0.0\\t0.04525483304042179\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Sa::Compound:Disease\\t0.0\\t0.04611965178736803\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::C::Compound:Disease\\t0.0\\t0.028058361391694726\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::T::Compound:Disease\\t0.0\\t0.038306671019697466\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::Z::Compound:Gene\\t0.0\\t0.02880794701986755\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::O::Compound:Gene\\t0.0\\t0.022804560912182435\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::E-::Compound:Gene\\t0.0\\t0.029489728296885353\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::B::Compound:Gene\\t0.0\\t0.02467972871137905\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::E+::Compound:Gene\\t0.0\\t0.019706691109074245\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::A-::Compound:Gene\\t0.0\\t0.014935064935064935\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::K::Compound:Gene\\t0.0\\t0.022138406034765495\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::N::Compound:Gene\\t0.0\\t0.02246597066208537\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::A+::Compound:Gene\\t0.0\\t0.018639798488664986\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tGNBR::E::Compound:Gene\\t0.0\\t0.01993939986316098\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDRUGBANK::treats::Compound:Disease\\t0.0\\t0.11123637730176625\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDRUGBANK::carrier::Compound:Gene\\t0.0\\t0.02620545073375262\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDRUGBANK::enzyme::Compound:Gene\\t0.0\\t0.04055220017256255\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDRUGBANK::target::Compound:Gene\\t0.0\\t0.04151064512677865\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDRUGBANK::x-atc::Compound:Atc\\t0.0\\t0.06368111799269494\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::PARTIAL AGONIST::Gene:Compound\\t0.0\\t0.0041753653444676405\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::ACTIVATOR::Gene:Compound\\t0.0\\t0.0110803324099723\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::ALLOSTERIC MODULATOR::Gene:Compound\\t0.0\\t0.009630818619582664\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::POSITIVE ALLOSTERIC MODULATOR::Gene:Compound\\t0.0\\t0.004098360655737705\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::ANTIBODY::Gene:Compound\\t0.0\\t0.00909090909090909\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::CHANNEL BLOCKER::Gene:Compound\\t0.0\\t0.0029985007496251873\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::BLOCKER::Gene:Compound\\t0.0\\t0.007132667617689016\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::MODULATOR::Gene:Compound\\t0.0\\t0.0071174377224199285\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::BINDER::Gene:Compound\\t0.0\\t0.014778325123152709\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::AGONIST::Gene:Compound\\t0.0\\t0.014144877839691384\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::OTHER::Gene:Compound\\t0.0\\t0.042175616501498044\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::ANTAGONIST::Gene:Compound\\t0.0\\t0.010582010582010581\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tDGIDB::INHIBITOR::Gene:Compound\\t0.0\\t0.034847186518137674\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tbioarx::Coronavirus_ass_host_gene::Disease:Gene\\t0.0\\t0.041666666666666664\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tbioarx::Covid2_acc_host_gene::Disease:Gene\\t0.0\\t0.02706359945872801\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tbioarx::DrugHumGen:Compound:Gene\\t0.0\\t0.06416\\t0.0\\n', 'bioarx::VirGenHumGen:Gene:Gene\\tbioarx::DrugVirGen:Compound:Gene\\t0.0\\t0.1744421906693712\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tHetionet::CpD::Compound:Disease\\t0.0\\t0.02483507954986418\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tHetionet::DrD::Disease:Disease\\t0.0\\t0.03316020775069916\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tHetionet::CtD::Compound:Disease\\t0.0\\t0.039251650770359504\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tGNBR::in_tax::Gene:Tax\\t0.0\\t0.012622556214407327\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tGNBR::Pr::Compound:Disease\\t0.0\\t0.09876943005181348\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tDGIDB::PARTIAL AGONIST::Gene:Compound\\t0.0\\t0.01828761429758936\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tDGIDB::ALLOSTERIC MODULATOR::Gene:Compound\\t0.0\\t0.025661271219897353\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tDGIDB::POSITIVE ALLOSTERIC MODULATOR::Gene:Compound\\t0.0\\t0.01569599339116068\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tDGIDB::ANTIBODY::Gene:Compound\\t0.0\\t0.012293507491356128\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tDGIDB::CHANNEL BLOCKER::Gene:Compound\\t0.0\\t0.03654223968565815\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tDGIDB::BLOCKER::Gene:Compound\\t0.0\\t0.042884990253411304\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tDGIDB::MODULATOR::Gene:Compound\\t0.0\\t0.02507076425394258\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tDGIDB::BINDER::Gene:Compound\\t0.0\\t0.03562850280224179\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tbioarx::DrugVirGen:Compound:Gene\\t0.0\\t0.18\\t0.0\\n', 'bioarx::HumGenHumGen:Gene:Gene\\tbioarx::VirGenHumGen:Gene:Gene\\t0.0\\t0.15602836879432624\\t0.0\\n']\n"
     ]
    }
   ],
   "source": [
    "print(jacard_triplets_store)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.7.6"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 2
}
